Warning, /office/kbibtex-testset/bib/in-the-wild/tlsmd_refs.bib is written in an unsupported language. File is not indexed.
0001 0002 @article{PHENIX, 0003 author = "Adams, P D and Grosse-Kunstleve, R W and Hung, L W and Ioerger, T R and McCoy, A T and Moriarty, N W and Read, R J and Sacchettini, J C and Sauter, N K and Terwilliger, T C", 0004 year = 2002, 0005 journal = "Acta Cryst", 0006 volume = "D58", 0007 pages = "1948--1954" 0008 } 0009 0010 @article{Akif_2005, 0011 author = "Akif, M and Suhre, K and Verma, C and Mande, S C", 0012 year = 2005, 0013 title = "Conformational flexibility of Mycobacterium tuberculosis thioredoxin reductase: crystal structure and normal-mode analysis", 0014 journal = "Acta Cryst.", 0015 volume = "D61", 0016 pages = "1603--1611" 0017 } 0018 0019 @article{Alexandrov_2005, 0020 author = "Alexandrov, V and Lehnert, U and Echols, N and Milburn, D and Engelman, D and Gerstein, M", 0021 year = 2005, 0022 title = "Normal modes for predicting protein motions: A comprehensive database assessment and associated Web tool", 0023 journal = "Protein Science", 0024 volume = "14", 0025 pages = "633--643" 0026 } 0027 0028 @article{Bellman_1958, 0029 author = "Bellman, R.", 0030 year = 1958, 0031 title = "On a Routing Problem", 0032 journal = "Quarterly of Applied Mathematics", 0033 volume = "16", 0034 pages = "87--90" 0035 } 0036 0037 @article{Bernett_2004, 0038 author = "Bernett, M. J. and Somasundaram, T. and Blaber, M.", 0039 year = 2004, 0040 title = "An atomic resolution structure for human fibroblast growth factor 1", 0041 journal = "PROTEINS: Structure, Function, and Bioinformatics", 0042 volume = "57", 0043 pages = "626--634" 0044 } 0045 0046 @article{Brooijmans_2003, 0047 author= "Brooijmans, N and Kuntz, ID", 0048 year = 2003, 0049 title = "Molecular recognition and docking algorithms", 0050 journal = "Annu Rev Biophys Biomol Struct.", 0051 volume = "32", 0052 pages = "336--73" 0053 } 0054 0055 @article{Brooks_1983, 0056 author = "Brooks, B and Karplus, M", 0057 year = 1983, 0058 title = "Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor", 0059 journal = "Proc. Natl Acad. Sci. USA", 0060 volume = "80", 0061 pages = "6571--6575" 0062 } 0063 0064 @article{CCP4, 0065 author= "{CollaborativeComputational Project Number 4}", 0066 year = 1994, 0067 title = "The CCP4 Suite: Programs for Protein Crystallography", 0068 journal = "Acta Cryst.", 0069 volume = "D50", 0070 pages = "760--763" 0071 } 0072 0073 @article{Chaudhry_2004, 0074 author = "Chaudhry, C. and Horwich, A. L. and Brunger, A. T. and Adams, P. D.", 0075 year = 2004, 0076 title = "Exploring the Structural Dynamics of the E. coli Chaperonin GroEL Using Translation-libration-screw Crystallographic Refinement of Intermediate States", 0077 journal = "J. Molec. Biol.", 0078 volume = "342", 0079 pages = "229--245" 0080 } 0081 0082 @article{Dijkstra_1959, 0083 author = "Dijkstra, DW", 0084 year = 1959, 0085 title = "A note on two problems in connexion with graphs", 0086 journal = "In: Numerische Mathematik.", 0087 volume = "1 (1959)", 0088 pages = "S. 269--271" 0089 } 0090 0091 @article{Driessen_1989, 0092 author = "Driessen, H. and Haneef, M. I. J. and Harris, G. W. and Howlin, B. and Khan, G. and Moss, D. S.", 0093 year = 1989, 0094 title = "RESTRAIN: restrained structure-factor least-squares refinement program for macromolecular structures", 0095 journal = "J. Appl. Cryst.", 0096 volume = "22", 0097 pages = "510--516" 0098 } 0099 0100 @article{Dunitz_1988, 0101 author = "Dunitz, J. and Schomaker, V. and Trueblood, K. N.", 0102 year = 1988, 0103 title = "Interpretation of anisotropic displacement parameters from diffraction studies of crystals", 0104 journal = "J. Phys. Chem.", 0105 volume = "92", 0106 pages = "856--867" 0107 } 0108 0109 @article{Dunker_2002, 0110 author= "Dunker, A K and Brown C J and Lawson J D and Iakoucheva L M and Obradovic Z", 0111 year = 2002, 0112 title = "Intrinsic disorder and protein function", 0113 journal = "Biochemistry", 0114 volume = "41", 0115 pages = "6573--6582" 0116 } 0117 0118 @article{Echols_2003, 0119 author = "Echols, N and Milburn, D and Gerstein M", 0120 year = 2003, 0121 title = "MolMovDB: analysis and visualization of conformational change and structural flexibility", 0122 journal = "Nucleic Acids Res", 0123 volume = "31", 0124 pages = "478--82" 0125 } 0126 0127 @article{Emsley_2004, 0128 author = "Emsley, P. and Cowtan, K.", 0129 year = 2004, 0130 title = "Coot: Model-Building Tools for Molecular Graphics", 0131 journal = "Acta Cryst.", 0132 volume = "D60", 0133 pages = "2126--2132" 0134 } 0135 0136 @book{Ford_1962, 0137 author= "Ford, Jr., L R and Fulkerson, D. R.", 0138 title = "Flows in Networks", 0139 publisher = "Princeton University Press", 0140 year = 1962 0141 } 0142 0143 @book{Gerstein_1999, 0144 author = "Gerstein, M. B. and Jansen, R. and Johnson, T. and Park, B. and Krebs, W", 0145 year = 1999, 0146 arttitle = "Studying Macromolecular Motions in a Database Framework: From Structure to Sequence", 0147 title = "Rigidity Theory and Applications (ed. Thorpe and Duxbury)", 0148 publisher = "Kluwer Academic, Norwell MA, USA.", 0149 pages = "401--442" 0150 } 0151 0152 @article{Grosse-Kunstleve_2002, 0153 author = "Grosse-Kunstleve, R. W. and Sauter, N. K. and Moriarty, N. W. and Adams, P. D.", 0154 year = 2002, 0155 title = "The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework", 0156 journal = "J. Appl. Cryst.", 0157 volume = "35", 0158 pages = "126--136" 0159 } 0160 0161 @article{He_Craven, 0162 author = "He, X-M. and Craven, B.", 0163 year = 1993, 0164 title = "Internal vibrations of a molecule consisting of rigid segments", 0165 journal = "Non-interacting internal vibrations. Acta Cryst.", 0166 volume = "A49", 0167 pages = "10--22" 0168 } 0169 0170 @article{Horn_Shoichet_2004, 0171 author= "Horn, J R and Shoichet, B K", 0172 year = 2004, 0173 title = "Allosteric inhibition through core disruption", 0174 journal = "J Mol Biol.", 0175 volume = "336", 0176 pages = "1283--1291" 0177 } 0178 0179 @article{Howlin_1989, 0180 author = "Howlin, B. and Moss, D. S. and Harris, G. W.", 0181 year = 1989, 0182 title = "Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body TLS model", 0183 journal = "Acta Cryst.", 0184 volume = "A45", 0185 pages = "851--861" 0186 } 0187 0188 @article{Howlin_1993, 0189 author = "Howlin, B. and Butler, S. A. and Moss, D. S. and Harris, G. W. and Driessen, H. P. C.", 0190 year = 1993, 0191 title = "TLSANL - TLS parameter-analysis program for segmented anisotropic refinement of macromolecular structures", 0192 journal = "J. Appl. Cryst.", 0193 volume = "26", 0194 pages = "622--624" 0195 } 0196 0197 @article{Krebs_Gerstein_2000, 0198 author= "Krebs, W G and Gerstein, M.", 0199 year = 2000, 0200 title = "The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework", 0201 journal = "Nucleic Acids Res.", 0202 volume = "28", 0203 pages = "1665--1675" 0204 } 0205 0206 @article{Krebs_2002, 0207 author = "Krebs, W G and Alexandrov, V and Wilson, C A and Echols, N and Yu, H and Gerstein, M", 0208 year = 2002, 0209 title = "Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic", 0210 journal = "Proteins", 0211 volume = "48", 0212 pages = "682--695" 0213 } 0214 0215 @article{Kuriyan_Weis_1991, 0216 author = "Kuriyan, J. and Weis, W. I.", 0217 year = 1991, 0218 title = "Rigid protein motion as a model for crystallographic temperature factors", 0219 journal = "Proc. Natl. Acad. Sci. USA", 0220 volume = "88", 0221 pages = "2773--2777" 0222 } 0223 0224 @article{Maiorov_1997, 0225 author = "Maiorov, V and Abagyan, R.", 0226 year = 1997, 0227 title = "A new method for modeling large-scale rearrangements of protein domains", 0228 journal = "PROTEINS: Structure, Function, and Genetics", 0229 volume = "27", 0230 pages = "410--424" 0231 } 0232 0233 @article{McMartin_1997, 0234 author= "McMartin, C and Bohacek, R S", 0235 year = 1997, 0236 title = "QXP: powerful, rapid computer algorithms for structure-based drug design", 0237 journal = "J Comput Aided Mol Des.", 0238 volume = "11", 0239 pages = "333--44" 0240 } 0241 0242 @article{XtalView, 0243 author = "McRee, D. E.", 0244 year = 1999, 0245 title = "XtalView/Xfit - A versatile program for manipulating atomic coordinates and electron density", 0246 journal = "J. Structural Biol.", 0247 volume = "125", 0248 pages = "156--165" 0249 } 0250 0251 @article{Merritt_Murphy_1994, 0252 author = "Merritt, E A and Murphy, M E P", 0253 year = 1994, 0254 title = "Raster3D Version 2.0: A Program for Photorealistic Molecular Graphics", 0255 journal = "Acta Cryst.", 0256 volume = "D50", 0257 pages = "869--873" 0258 } 0259 0260 @ARTICLE{Merritt_Gal_site_1994, 0261 AUTHOR="Merritt, EA 0262 and Sixma, TK 0263 and Kalk, KH 0264 and van Zanten, BAM 0265 and Hol, WGJ", 0266 TITLE="Galactose-binding site in Escherichia coli heat-labile enterotoxin (LT) and cholera toxin (CT)", 0267 JOURNAL="Molecular Microbiology", 0268 YEAR="1994", 0269 MONTH="AUG", 0270 VOLUME="13", 0271 ISSUE="4", 0272 PAGES="745--753" 0273 } 0274 0275 @ARTICLE{Merritt_CTB_GM1_1994, 0276 AUTHOR="Merritt, EA 0277 and Sarfaty, S. 0278 and van den Akker, F. 0279 and L'Hoir, C. 0280 and Martial, JA 0281 and Hol, WGJ", 0282 TITLE="Crystal structure of cholera toxin B-pentamer bound to receptor GM1 pentasaccharide", 0283 JOURNAL="Protein Science", 0284 YEAR="1994", 0285 MONTH="FEB", 0286 VOLUME="3", 0287 ISSUE="2", 0288 PAGES="166--175" 0289 } 0290 0291 @article{Raster3D, 0292 author = "Merritt, E. A. and Bacon, D. J.", 0293 year = 1997, 0294 title = "Raster3D - photorealistic molecular graphics", 0295 journal = "Meth. Enzymol.", 0296 volume = "277", 0297 pages = "505--524" 0298 } 0299 0300 @article{Merritt_parvati, 0301 author = "Merritt, E. A.", 0302 year = 1999, 0303 title = "Expanding the model - anisotropic displacement parameters in protein structure refinement", 0304 journal = "Acta Cryst.", 0305 volume = "D55", 0306 pages = "1109--1117." 0307 } 0308 0309 @article{Merritt_suv, 0310 author = "Merritt, E. A.", 0311 year = 1999, 0312 title = "Comparing Anisotropic Displacement Parameters in Protein Structures", 0313 journal = "Acta Cryst.", 0314 volume = "D55", 0315 pages = "1997--2004." 0316 } 0317 0318 @article{Merritt_pentapus_2002, 0319 author = "Merritt, E A and Zhang, Z and Pickens, J C and Ahn, M and Hol, W G J and Fan, E", 0320 year = 2002, 0321 title = "Characterization and Crystal Structure of a High-Affinity Pentavalent Receptor-Binding Inhibitor for Cholera Toxin and E. coli Heat-Labile Enterotoxin", 0322 journal = "J. Am. Chem. Soc.", 0323 volume = "124", 0324 pages = "8818--8824" 0325 } 0326 0327 @article{Ming_2002, 0328 author = "Ming, D. and Kong, Y. and Lambert, M A and Huang, Z and Ma, J.", 0329 year = 2002, 0330 title = "How to describe protein motion without amino acid sequence and atomic coordinaates", 0331 journal = "Proc. Natl. Acad. Sci. USA", 0332 volume = "99", 0333 pages = "8620--8625" 0334 } 0335 0336 @article{Minke_MCPG_2000, 0337 author = "Minke, W. E. and Pickens, J. and Merritt, E. A. and Fan, E. and Verlinde, C. L. M. J. and Hol, W. G. J.", 0338 year = 2000, 0339 title = "`Crystal structure of mcarboxyphenyl-?-D-galactose complexed to heat-labile enterotoxin at 1.3Å resolution: surprising variations in ligand binding modes", 0340 journal = "Acta Cryst.", 0341 volume = "D56", 0342 pages = "795--804" 0343 } 0344 0345 @book{Moss_1996, 0346 author = "Moss, D. S. and Tickle, I. J. and Theis, O. and Wostrack, A.", 0347 year = 1996, 0348 title = "X-ray analysis of domain motions in protein crystals", 0349 journal = "Proceedings of the CCP4 Study Weekend January 1996", 0350 publisher = "CLRC DL-CONF-96-001", 0351 pages = "105--113" 0352 } 0353 0354 @article{Mouawad, 0355 author= "Mouawad, L and D Perahia", 0356 year = 1993, 0357 title = "DIMB: diagonalization in a mixed basis: a method to compute low-frequency normal modes for large macromolecules", 0358 journal = "Biopolymers", 0359 volume = "33", 0360 pages = "569--611" 0361 } 0362 0363 @article{Murshudov_1999, 0364 author = "Murshudov, G. N. and Lebadev, A. and Vagin, A. A. and Wilson, K. S. and Dodson, E. J.", 0365 year = 1999, 0366 title = "Efficient anisotropic refinement of Macromolecular structures using FFT", 0367 journal = "Acta Cryst.", 0368 volume = "D55", 0369 pages = "247--255 " 0370 } 0371 0372 @article{Navaza_1994, 0373 author = "Navaza, J.", 0374 year = 1994, 0375 title = "AMoRe: an automated package for molecular replacement", 0376 journal = "Acta Cryst.", 0377 volume = "A50", 0378 pages = "157--163" 0379 } 0380 0381 @article{Painter_mmLib, 0382 author = "Painter, J. and Merritt, E. A.", 0383 year = 2004, 0384 title = "mmLib Python toolkit for manipulating annotated structural models of biological macromolecules", 0385 journal = "J. Appl. Cryst.", 0386 volume = "37", 0387 pages = "174--178" 0388 } 0389 0390 @article{Painter_tlsview, 0391 author = "Painter, J. and Merritt, E. A.", 0392 year = 2005, 0393 title = "A molecular viewer for the analysis of TLS rigid-body motion in macromolecules", 0394 journal = "Acta Cryst.", 0395 volume = "D61", 0396 pages = "465--471" 0397 } 0398 0399 @article{Papiz_1996, 0400 author = "Papiz, M. Z. and Prince, S. M.", 0401 title = "Group anisotropic thermal parameter refinement of the light-harvesting complex from purple bacteria Rhodopseudomonas acidophila", 0402 journal = "Proceedings of the CCP4 Study Weekend January 1996", 0403 volume = "CLRC DL-CONF-96-001", 0404 pages = "115--123", 0405 year = 1996 0406 } 0407 0408 @article{Papiz_2003, 0409 author = "Papiz, M. Z. and Prince, S. M. and Howard, T. and Cogdell, R. J. and Isaacs, N. W.", 0410 year = 2003, 0411 title = "The structure and thermal motion of the B800-850 LH2 complex from Rps acidophila at 2.0Å resolution and 100 K: new structural features and functionally relevant motions", 0412 journal = "J. Mol. Biol.", 0413 volume = "326", 0414 pages = "1523--1538" 0415 } 0416 0417 @article{Philippopoulos, 0418 author= "Philippopoulos, M and Lim, C.", 0419 year = 1999, 0420 title = "Exploring the dynamic information content of a protein NMR structure: comparison of a molecular dynamics simulation with the NMR and X-ray structures of Escherichia coli ribonuclease HI", 0421 journal = "Proteins", 0422 volume = "36", 0423 pages = "87--110" 0424 } 0425 0426 @article{Pickens_2004, 0427 author = "Pickens, J C and Mitchell, D D and Liu, J and Tan, X and Zhang, Z and Verlinde, C L and Hol, W G and Fan, E", 0428 year = 2004, 0429 title = "Nonspanning bivalent ligands as improved surface receptor binding inhibitors of the cholera toxin B pentamer", 0430 journal = "Chem Biol.", 0431 volume = "11", 0432 pages = "1205--1215" 0433 } 0434 0435 @article{Rohl_2004a, 0436 author = "Rohl, C A and Strauss C E and Misura K M and Baker D", 0437 title = "Protein structure prediction using Rosetta", 0438 year = 2004, 0439 journal = "Methods Enzymol.", 0440 volume = "383", 0441 pages = "66--93" 0442 } 0443 0444 @article{Rohl_2004b, 0445 author= "Rohl, C A and Strauss C E and Chivian D and Baker D", 0446 year = 2004, 0447 title = "Modeling structurally variable regions in homologous proteins with rosetta", 0448 journal = "Proteins", 0449 volume = "55", 0450 pages = "656--77" 0451 } 0452 0453 @article{Rosenfield_1978, 0454 author="R. E. Rosenfield and K. N. Trueblood and J. D. Dunitz", 0455 title= "Test for rigid-body vibrations, based on a generalization of Hirshfeld rigid-bond postulate", 0456 year = 1978, 0457 journal = "Acta Cryst.", 0458 volume = "A34", 0459 pages = "828--829" 0460 } 0461 0462 @article{Schomaker_1968, 0463 author = "Schomaker, V. and Trueblood, K. N.", 0464 year = 1968, 0465 title = "On the rigid-body motion of molecules in crystals", 0466 journal = "Acta Cryst.", 0467 volume = "B24", 0468 pages = "63--76" 0469 } 0470 0471 @article{Sheldrick_1997, 0472 author = "Sheldrick, G. M. and Schneider, T. R.", 0473 year = 1997, 0474 title = "SHELXL: high-resolution refinement", 0475 journal = "Meth. Enzymol.", 0476 volume = "277", 0477 pages = "319--343" 0478 } 0479 0480 @article{Sternberg_1979, 0481 author= "Sternberg, M J and Grace, D E and Phillips, D C", 0482 year = 1979, 0483 title = "Dynamic information from protein crystallography: An analysis of temperature factors from refinement of the hen egg-white lysozyme structure", 0484 journal = "J. Molec. Biol.", 0485 volume = "130", 0486 pages = "231--52" 0487 } 0488 0489 @article{Suhre_2004a, 0490 author = "Suhre, K and Sanejouand, Y H", 0491 year = 2004, 0492 title = "ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement", 0493 journal = "Nucleic Acids Research", 0494 volume = "32", 0495 pages = "W610--614" 0496 } 0497 0498 @article{Suhre_2004b, 0499 author = "Suhre, K and Sanejouand, Y H", 0500 year = 2004, 0501 title = "On the potential of normal-mode analysis for solving difficult molecular-replacement problems", 0502 journal = "Acta Cryst.", 0503 volume = "D60", 0504 pages = "796--799" 0505 } 0506 0507 @article{Takeda-Shitaka, 0508 author= "Takeda-Shitaka, M and Takaya D and Chiba C and Tanaka H and Umeyama, H.", 0509 year = 2004, 0510 title = "Protein structure prediction in structure based drug design", 0511 journal = "Curr Med Chem.", 0512 volume = "11", 0513 pages = "551--8" 0514 } 0515 0516 @article{Tama_2000, 0517 author = "Tama, F and Gadea, F X and Marques, O and Sanejouand, Y H", 0518 year = 2000, 0519 title = "Building-block approach for determining low-frequency normal modes of macromolecules", 0520 journal = "Proteins Struct. Funct. Genet.", 0521 volume = "41", 0522 pages = "1--7" 0523 } 0524 0525 @article{Tama_2003, 0526 author = "Tama, F and Valle, M and Frank, J and Brooks, C J (III)", 0527 year = 2003, 0528 title = "Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy", 0529 journal = "Proc. Natl Acad. Sci. USA", 0530 volume = "100", 0531 pages = "9319--9323" 0532 } 0533 @article{Teodoro_2003a, 0534 author= "Teodoro, M L and Kavraki L E", 0535 year = 2003, 0536 title = "Conformational flexibility models for the receptor in structure based drug design", 0537 journal = "Curr Pharm Des.", 0538 volume = "9", 0539 pages = "1635--1648" 0540 } 0541 0542 @article{Teodoro_2003b, 0543 author= "Teodoro, M L and Phillips, Jr, G N and Kavraki L E", 0544 year = 2003, 0545 title = "Understanding protein flexibility through dimensionality reduction", 0546 journal = "J Comput Biol.", 0547 volume = "10", 0548 pages = "617--34" 0549 } 0550 0551 @article{Tirion, 0552 author = "Tirion, M M", 0553 year = 1996, 0554 title = "Large amplitude elastic motions in proteins from a single-parameter, atomic analysis", 0555 journal = "Phys. Rev. Lett.", 0556 volume = "77", 0557 pages = "1905--1908" 0558 } 0559 0560 @article{Trapani_2005, 0561 author = "Trapani, S and Navaza, J.", 0562 year = 2005, 0563 title = "NCS and Normal Modes Ensembles Solve Difficult MR Problem", 0564 journal = "XX Congress of the International Union of Crystallography, Florence, Italy, August", 0565 volume = "23-31", 0566 pages = "2005" 0567 } 0568 0569 @article{Trueblood_1978, 0570 author = "Trueblood, K. N.", 0571 year = 1978, 0572 title = "Analysis of molecular motion with allowance for intramolecular torsion", 0573 journal = "Acta Cryst.", 0574 volume = "A34", 0575 pages = "950--954" 0576 } 0577 0578 @article{Trueblood_1996, 0579 author = "Trueblood, K. N. and Bürgi, H.-B. and Burzlaff, H. and Dunitz, J. D. and Gramaccioli, C. M. and Schulz, H. H. and Shmueli, U. and Abrahams, S. C.", 0580 year = 1996, 0581 title = "Atomic displacement parameter nomenclature", 0582 journal = "Acta Cryst.", 0583 volume = "A52", 0584 pages = "770--781" 0585 } 0586 0587 @article{Vajda_2005, 0588 author = "Vajda, S.", 0589 year = 2005, 0590 title = "Classification of protein complexes based on docking difficulty", 0591 journal = "PROTEINS: Structure, Function, and Bioinformatics", 0592 volume = "60", 0593 pages = "176--180" 0594 } 0595 0596 @article{Wang_groEL_2003, 0597 author = " Wang, J and Boisvert, D C", 0598 title = "Structural basis for GroEL-assisted protein folding from the crystal structure of (GroEL-KMgATP)(14) at 2.0 angstrom resolution", 0599 journal = "J. Molec. Biol.", 0600 volume = "327", 0601 pages = "843--855", 0602 year = 2003 0603 } 0604 0605 @article{Waldrop_1994, 0606 author = "Waldrop, G. L. and Rayment, I. and Holden, H. M.", 0607 year = 1994, 0608 title = "Three-dimensional structure of the biotin carboxylase subunit of acetyl-CoA carboxylase", 0609 journal = "Biochemistry", 0610 volume = "33", 0611 pages = "10249--10256" 0612 } 0613 0614 @article{Wernisch_1999, 0615 author = "Wernisch, L. and Hunting, M. and Wodak, S.", 0616 year = 1999, 0617 title = "Identification of structural domains in proteins by a graph heuristic", 0618 journal = "Proteins", 0619 volume = "35", 0620 pages = "338--352" 0621 } 0622 0623 @book{ willis_pryor, 0624 author = "Willis, B. T. M. and Pryor, A. W.", 0625 title = "Thermal Vibrations in Crystallography", 0626 publisher = "Cambridge University Press", 0627 year = 1975 } 0628 0629 @article{Wilson_Brunger_2000, 0630 author = "Wilson, M. A. and Brunger, A. T.", 0631 year = 2000, 0632 title = "The 1.0Å crystal structure of Ca2+-bound calmodulin: an analysis of disorder and implications for functionally relevant plasticity", 0633 journal = "J. Mol. Biol.", 0634 volume = "301", 0635 pages = "1237--1256" 0636 } 0637 0638 @article{Winn_2001, 0639 author= "Winn, M D and Isupov, M N and Murshudov, G N", 0640 year = 2001, 0641 title = "Use of TLS parameters to model anisotropic displacements in macromolecular refinement", 0642 journal = "Acta Cryst.", 0643 volume = "D57", 0644 pages = "122--133" 0645 } 0646 0647 @article{Wriggers_1997, 0648 author = "Wriggers, W and Schulten, K.", 0649 year = 1997, 0650 title = "Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates", 0651 journal = "PROTEINS: Structure, Function, and Genetics", 0652 volume = "29", 0653 pages = "1--14" 0654 } 0655 0656 @article{Yousef_2002, 0657 author = " Yousef, M S and Fabiola, F and Gattis, J L and Somasundaram, T and Chapman, M S", 0658 title = "Refinement of the arginine kinase transition-state analogue complex at 1.2 angstrom resolution: mechanistic insights", 0659 journal = "Acta Cryst.", 0660 volume = "D58", 0661 pages = "2009--2017", 0662 year = 2002 0663 } 0664 0665 @article{Zacharias_1999, 0666 author= "Zacharias, M and Sklenar H.", 0667 year = 1999, 0668 title = "Conformational analysis of single-base bulges in A-form DNA and RNA using a hierarchical approach and energetic evaluation with a continuum solvent model", 0669 journal = "J. Mol. Biol.", 0670 volume = "289", 0671 pages = "261--275" 0672 } 0673 0674 @article{Zhang_2002, 0675 author = "Zhang, Z and Merritt, E A and Ahn, M and Roach, C and Hou, Z and Verlinde and C L M J and Hol and W G J and Fan E", 0676 year = 2002, 0677 title = "Solution and crystallographic studies of branched multivalent ligands that inhibit the receptor-binding of cholera toxin", 0678 journal = "J. Am. Chem. Soc.", 0679 volume = "124", 0680 pages = "12991--12998" 0681 } 0682 0683