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0001 @ARTICLE{yalavarthy,
0002 author = "P K Yalavarthy and D R Lynch and B W Pogue and H Dehghani and K D Paulsen",
0003 title = "Implementation of a computationally efficient least-squares algorithm for highly under-determined three-dimensional diffuse optical tomography problems",
0004 journal = "Med Phys.",
0005 volume = 35,
0006 number = 5,
0007 pages = "1682--1697",
0008 year = 2008,
0009 url="http://nir.engineering.dartmouth.edu/downnew/Yalavarthy_MedPhys_2008.pdf"}
0010
0011 @ARTICLE{yalavarthy3,
0012 author = "P K Yalavarthy and H Dehghani and B W Pogue and K D Paulsen",
0013 title = "Critical computational aspects of near infrared circular tomographic imaging: Analysis of measurement number, mesh resolution and reconstruction basis",
0014 journal = "Opt. Express",
0015 volume = 14,
0016 pages = "6113--6127",
0017 year = 2006,
0018 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Yalavarthy_OptExp_2006.pdf"}
0019
0020 @ARTICLE{dehghani3,
0021 author = "H Dehghani and S Srinivasan and B W Pogue and A Gibson",
0022 title = "Numerical modeling and image reconstruction in diffuse optical tomography",
0023 journal = "Phil. Trans. R. Soc. A",
0024 year = 2009}
0025
0026 @ARTICLE{chu3,
0027 author = "M Chu and K Vishwanath and A D Klose and H Dehghani",
0028 title = "Light transport in biological tissue using three-dimensional frequency-domain simplified spherical harmonics equations",
0029 journal = "Phys. Med. Biol.",
0030 volume = 54,
0031 pages = "2493--2509",
0032 year = 2009,
0033 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Chu_PMB_2009.pdf"}
0034
0035 @ARTICLE{dehghani4,
0036 author = "H Dehghani and B R White and B W Zeff and A Tizzard and J P Culver",
0037 title = "Depth sensitivity and image reconstruction analysis of dense imaging arrays for mapping brain function with diffuse optical tomography",
0038 journal = "Applied Optics",
0039 volume = 48,
0040 number = 10,
0041 year = 2009,
0042 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Dehghani_AO_2009.pdf"}
0043
0044 @ARTICLE{dehghani5,
0045 author = "H Dehghani and M E Eames and P K Yalavarthy and S C Davis and S Srinivasan and C M Carpenter and B W Pogue and K D Paulsen",
0046 title = "Near Infrared Optical Tomography using NIRFAST: Algorithms for Numerical Model and Image Reconstruction Algorithms",
0047 journal = "Communications in Numerical Methods in Engineering",
0048 year = 2009,
0049 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Dehghani_CNM_2008.pdf"}
0050
0051 @ARTICLE{emaes5,
0052 author = "M W Emaes and B W Pogue and P K Yalavarthy and H Dehghani",
0053 title = "An efficient Jacobian reduction method for diffuse optical image reconstruction",
0054 journal = "Optics Express",
0055 volume = 15,
0056 number = 24,
0057 year = 2007,
0058 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Eames_OE_2007.pdf"}
0059
0060 @ARTICLE{yalavarthy5,
0061 author = "P K Yalavarthy and B W Pogue and H Dehghani and K D Paulsen",
0062 title = "Weight-Matrix Structured Regularization Provides Optimal Generalized Least-Squares Estimate in Diffuse Optical Tomography",
0063 journal = "Med. Phys.",
0064 volume = 34,
0065 number = 6,
0066 pages = "2085--2098",
0067 year = 2007,
0068 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Yalavarthy_Medphys_2007.pdf"}
0069
0070 @ARTICLE{wang6,
0071 author = "X Wang and B W Pogue and S Jiang and H Dehghani and X Song and S Srinivasan and B W Brooksby and K D Paulsen and C Kogel and S P Poplack and W A Wells",
0072 title = "Image reconstruction of effective Mie scattering parameters of breast tissue in vivo with near-infrared tomography",
0073 journal = "J. Biomed. Opt.",
0074 volume = 11,
0075 number = 4,
0076 year = 2006,
0077 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Wang_JBO_2006.pdf"}
0078
0079 @ARTICLE{pogue6,
0080 author = "B W Pogue and S C Davis and X Song and B Brooksby and H Dehghani and K D Paulsen",
0081 title = "Image analysis methods for Diffuse Optical Tomography",
0082 journal = "J. Biomed. Opt.",
0083 volume = 11,
0084 number = 3,
0085 year = 2006,
0086 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Pogue_JBO_2006.pdf"}
0087
0088 @ARTICLE{srinivasan6,
0089 author = "S Srinivasan and B W Pogue and H Dehghani and S Jian and X Song and K D Paulsen",
0090 title = "Improved Quantification of Small Objects in Near-Infrared Diffuse Optical Tomography",
0091 journal = "JBO",
0092 volume = 9,
0093 pages = "1161--1171",
0094 year = 2004,
0095 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/SrinivasanJBO2004.pdf"}
0096
0097 @ARTICLE{song7,
0098 author = "X Song and B W Pogue and S Jiang and M Doyley and H Dehghani and T D Tosteson and K D Paulsen",
0099 title = "Automated Region Detection Based Upon Contrast To Noise Ratio in Near-Infrared Tomography",
0100 journal = "Applied Optics",
0101 volume = 43,
0102 number = 5,
0103 pages = "1053--1062",
0104 year = 2004,
0105 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/Song_AO_feb2004.pdf"}
0106
0107 @ARTICLE{dehghani7,
0108 author = "H Dehghani and B Brooksby and K Vishwanath and B W Pogue and K D Paulsen",
0109 title = "The effects of internal refractive index variation in near infrared optical tomography: A finite element modeling approach",
0110 journal = "Phys. Med. Biol.",
0111 volume = 48,
0112 pages = "2713--2727",
0113 year = 2003,
0114 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/ref-index.pdf"}
0115
0116 @ARTICLE{dehghani8,
0117 author = "H Dehghani and B W Pogue and J Shudong and B Brooksby and K D Paulsen",
0118 title = "Three Dimensional Optical Tomography: Resolution in Small Object Imaging",
0119 journal = "Applied Optics",
0120 volume = 42,
0121 number = 18,
0122 pages = "3117--3128",
0123 year = 2003,
0124 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/dehghani_AO_42.pdf"}
0125
0126 @ARTICLE{dehghani9,
0127 author = "H Dehghani and B W Pogue and S P Poplack and K D Paulsen",
0128 title = "Multiwavelength Three Dimensional Near Infrared Tomography of the Breast: Initial Simulation, Phantom and Clinical results",
0129 journal = "Applied Optics",
0130 volume = 42,
0131 number = 1,
0132 pages = "135--145",
0133 year = 2003,
0134 url = "http://www.cs.bham.ac.uk/~dehghanh/research/downloads/AO_dehghani_Jan2003.pdf"}
0135
0136 @ARTICLE{jermyn1,
0137 author = "M Jermyn and B W Pogue and S Srinivasan and S Davis and H Dehghani",
0138 title = "Algorithm for Automated Source Placement in Near-Infrared Diffuse Imaging",
0139 journal = "Optical Society of America Biomed Conference",
0140 year = 2010}
0141
0142 @ARTICLE{malinsky1,
0143 author = "M Malinsky and M Jermyn and B W Pogue and H Dehghani",
0144 title = "An Online Modeling and Image Reconstruction Tool for Optical Imaging Based on NIRFAST",
0145 journal = "Optical Society of America Biomed Conference",
0146 year = 2010}
0147
0148 @ARTICLE{a20,
0149 author = "H Dehghani and S Srinivasan and B W Pogue and A Gibson",
0150 title = "Numerical modelling and image reconstruction in diffuse optical tomography.",
0151 journal = "Philosophical Transactions of the Royal Society London",
0152 volume = 367,
0153 number = 1900,
0154 year = 2009}
0155
0156 @ARTICLE{a21,
0157 author = "C M Carpenter and R Rakow-Penner and S Jiang and B L Daniel and B W Pogue and G H Glover and K D Paulsen",
0158 title = "Inspired gas-induced vascular change in tumors with magnetic-resonance-guided near-infrared imaging: human breast pilot study",
0159 journal = "Journal of Biomedical Optics",
0160 volume = 15,
0161 number = 3,
0162 year = 2010}
0163
0164 @ARTICLE{a22,
0165 author = "B W Pogue and K S Samkoe and S Hextrum and J A O'Hara and M Jermyn and S Srinivasan and T Hasan",
0166 title = "Imaging Targeted-Agent Binding In Vivo",
0167 journal = "Journal of Biomedical Optics Letters",
0168 volume = 15,
0169 number = 3,
0170 year = 2010}
0171
0172 @ARTICLE{a23,
0173 author = "J Wang and S Jiang and Z Li and R M diFlorio-Alexander and R J Barth and P A Kaufman and B W Pogue and K D Paulsen",
0174 title = "In vivo quantitative imaging of normal and cancerous breast tissue using broadband diffuse optical tomography",
0175 journal = "Medical Physics",
0176 volume = 37,
0177 number = 7,
0178 year = 2010}
0179
0180 @ARTICLE{a24,
0181 author = "C M Carpenter and R Rakow-Penner and S Jiang and B W Pogue and G H Glover and K D Paulsen",
0182 title = "Monitoring of hemodynamic changes induced in the healthy breast through inspired gas stimuli with MR-guided diffuse optical imaging",
0183 journal = "Medical Physics",
0184 volume = 37,
0185 number = 3,
0186 year = 2010}
0187
0188 @ARTICLE{a25,
0189 author = "J Wang and B W Pogue",
0190 title = "Near-infrared tomography of breast cancer hemoglobin, water, lipid, and scattering using combined frequency domain and cw measurement",
0191 journal = "Optics Letters",
0192 volume = 35,
0193 number = 1,
0194 year = 2010}
0195
0196 @ARTICLE{a26,
0197 author = "S Gupta and P K Yalavarthy and D Roy and D Piao",
0198 title = "Singular Value Decomposition based computationally efficient algorithm for rapid dynamic near-infrared diffuse optical tomography",
0199 journal = "Med. Phys.",
0200 volume = 36,
0201 number = 12,
0202 year = 2009}
0203